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TOPDOM: Conservatively Located Domains and Motifs in Proteins

List of proteins containing PF02845

DEF1_YEAST
RNA polymerase II degradation factor 1
Start
End
Sequence
24
61
SKIDTLTELFPDWTSDDLIDIVQEYDDLETIIDKITS
UniProt Not transmembrane protein
DEF1_CANAW
RNA polymerase II degradation factor 1
Start
End
Sequence
26
64
TELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVN
UniProt Not transmembrane protein
DEF1_LODEL
RNA polymerase II degradation factor 1
Start
End
Sequence
34
71
ELTSLTEMFPDWESDELNSLLQEKRNSLEVVIDLIVN
UniProt Not transmembrane protein
DEF1_CLAL4
RNA polymerase II degradation factor 1
Start
End
Sequence
24
63
SSQLQTLSEMFPAWEADELAALLSEHHDDVEIVIDLIVN
UniProt Not transmembrane protein
DEF1_CANAL
RNA polymerase II degradation factor 1
Start
End
Sequence
26
64
TELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVN
UniProt Not transmembrane protein
DEF1_CANTT
RNA polymerase II degradation factor 1
Start
End
Sequence
28
65
ELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVN
UniProt Not transmembrane protein
DEF1_KLULA
RNA polymerase II degradation factor 1
Start
End
Sequence
21
55
LETLSELFPDWTNDDLIDLVREYDDLETIVDKIT
UniProt Not transmembrane protein
DEF1_DEBHA
RNA polymerase II degradation factor 1
Start
End
Sequence
31
68
ELTSLLEMFPDWESDDLSSLLAEHNNILEVVIDLIVN
UniProt Not transmembrane protein
AMFR_MOUSE
E3 ubiquitin-protein ligase AMFR
Start
End
Sequence
458
497
NAMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILEG
UniProt Predicted topology
CUE1_CANAL
Coupling of ubiquitin conjugation to ER degradation protein 1
Start
End
Sequence
74
112
ESMIEVVQSIAPMLTVEQIRYDLETTGNVEATVNRFME
UniProt Predicted topology
Counters
Visitors 743503
CATH-Gene3D 1392
NCBIfam 586
PANTHER 1754
Pfam 2780
PRINTS 774
ProSite profiles 578
SMART 594
SUPERFAMILY 639
Inside 7417
Outside 1678
Transmem 1627
All 9097
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